Constructor for type graph

Usage

make_type_graph(
  root_id,
  node_id,
  tip_id,
  merge_matrix,
  differntiation_time,
  differntiation_mode_probs,
  double_time,
  founder_size,
  target_time,
  transition_selection = NULL
)

Arguments

root_id: name of root, which is the integer num_tip - 1
node_id: vector of names of the graph nodes, i.e. progenitor states
tip_id: vector of names of the graph tip, i.e. terminal states
merge_matrix: character matrix specifying the sequence of merges
differntiation_mode_probs: commitment bias, need to be vector of length 5, only first values two are non-zero
double_time: list of doubling times for each state
founder_size: founder size
target_time: time of sample collection
differentiation_time: commitment time of states