Phylotime for reconstructing time-scaled phylogeny based on lineage barcodes

Usage

phylotime(sc_mat, t_total, mut_p = NULL, return_dist = F, parallel = T)

sc_mat: character matrix cell x barcoding sites
t_total: total amount of time since barcode activation
return_dist: whetehr to return pairwise distance between cells, by default, an ape tree is returned